truvari: 1.3.4 -> 2.0.2, fixing build

seeing it has no tests, use pythonImportsCheck in an attempt to detect
total breakage, even though it's not intended to be used as an importable
module

(cherry picked from commit ecd5886830)

pkgs/applications/science/biology/truvari/default.nix

@@ -5,13 +5,13 @@
 
 python3Packages.buildPythonApplication rec {
   pname = "truvari";
-  version = "1.3.4";
+  version = "2.0.2";
 
   src = fetchFromGitHub {
     owner = "spiralgenetics";
     repo = "truvari";
     rev = "v${version}";
-    sha256 = "1bph7v48s7pyfagz8a2fzl5fycjliqzn5lcbv3m2bp2ih1f1gd1v";
+    sha256 = "0lp1wnldjv92k4ncga1h0icb0dpjsrx427vggg40x04a7kp9lwx0";
   };
 
   propagatedBuildInputs = with python3Packages; [
@@ -21,15 +21,16 @@ python3Packages.buildPythonApplication rec {
     pysam
     pyfaidx
     intervaltree
+    pytabix
+    acebinf
+    bwapy
+    joblib
+    pandas
   ];
 
-  prePatch = ''
-    substituteInPlace ./setup.py \
-      --replace '"progressbar2==3.41.0",' '"progressbar2",' \
-      --replace '"pysam==0.15.2",' '"pysam",' \
-      --replace '"pyfaidx==0.5.5.2",' '"pyfaidx",' \
-      --replace '"intervaltree==3.0.2",' '"intervaltree",'
-  '';
+  # no tests
+  doCheck = false;
+  pythonImportsCheck = [ "truvari" ];
 
   meta = with lib; {
     description = "Structural variant comparison tool for VCFs";